refactor(users/edef/weave/swizzle): use polars streaming

This vastly reduces the memory requirements, so we can run in ~40G RAM.

Change-Id: I4952a780df294bd852a8b4682ba2fd59b9bae675
Reviewed-on: https://cl.tvl.fyi/c/depot/+/12667
Reviewed-by: flokli <flokli@flokli.de>
Tested-by: BuildkiteCI
This commit is contained in:
edef 2024-10-17 13:26:01 +00:00
parent bdc2891053
commit 313899c291
5 changed files with 70 additions and 112 deletions

View file

@ -32,21 +32,21 @@
use anyhow::Result;
use hashbrown::HashTable;
use polars::prelude::*;
use rayon::prelude::*;
use std::fs::File;
use tokio::runtime::Runtime;
use polars::{
lazy::dsl::{col, SpecialEq},
prelude::*,
};
use weave::{as_fixed_binary, hash64, load_ph_array, DONE, INDEX_NULL};
use weave::{as_fixed_binary, hash64, leak, load_ph_array, DONE, INDEX_NULL};
fn main() -> Result<()> {
let ph_array = load_ph_array()?;
let ph_array: &'static [[u8; 20]] = leak(load_ph_array()?);
// TODO(edef): re-parallelise this
// We originally parallelised on chunks, but ph_array is only a single chunk, due to how Parquet loading works.
// TODO(edef): outline the 64-bit hash prefix? it's an indirection, but it saves ~2G of memory
eprint!("… build index\r");
let ph_map: HashTable<(u64, u32)> = {
let ph_map: &'static HashTable<(u64, u32)> = {
let mut ph_map = HashTable::with_capacity(ph_array.len());
for (offset, item) in ph_array.iter().enumerate() {
@ -55,59 +55,48 @@ fn main() -> Result<()> {
ph_map.insert_unique(hash, (hash, offset), |&(hash, _)| hash);
}
ph_map
&*Box::leak(Box::new(ph_map))
};
eprintln!("{DONE}");
eprint!("… swizzle references\r");
let mut pq = ParquetReader::new(File::open("narinfo.parquet")?)
.with_columns(Some(vec!["references".into()]))
.batched(1 << 16)?;
let mut reference_idxs =
Series::new_empty("reference_idxs", &DataType::List(DataType::UInt32.into()));
let mut bounce = vec![];
let runtime = Runtime::new()?;
while let Some(batches) = runtime.block_on(pq.next_batches(48))? {
batches
.into_par_iter()
.map(|df| -> ListChunked {
df.column("references")
.unwrap()
.list()
.unwrap()
.apply_to_inner(&|series: Series| -> PolarsResult<Series> {
let series = series.binary()?;
let mut out: Vec<u32> = Vec::with_capacity(series.len());
out.extend(as_fixed_binary::<20>(series).flat_map(|xs| xs).map(|key| {
let hash = hash64(&key);
ph_map
.find(hash, |&(candidate_hash, candidate_index)| {
candidate_hash == hash
&& &ph_array[candidate_index as usize] == key
})
.map(|&(_, index)| index)
.unwrap_or(INDEX_NULL)
}));
Ok(Series::from_vec("reference_idxs", out))
})
.unwrap()
let ph_to_idx = |key: &[u8; 20]| -> u32 {
let hash = hash64(key);
ph_map
.find(hash, |&(candidate_hash, candidate_index)| {
candidate_hash == hash && &ph_array[candidate_index as usize] == key
})
.collect_into_vec(&mut bounce);
.map(|&(_, index)| index)
.unwrap_or(INDEX_NULL)
};
for batch in bounce.drain(..) {
reference_idxs.append(&batch.into_series())?;
}
}
eprintln!("{DONE}");
eprint!("… writing output\r");
ParquetWriter::new(File::create("narinfo-references.parquet")?).finish(&mut df! {
"reference_idxs" => reference_idxs,
}?)?;
eprint!("… swizzle references\r");
LazyFrame::scan_parquet("narinfo.parquet", ScanArgsParquet::default())?
.with_column(
col("references")
.map(
move |series: Series| -> PolarsResult<Option<Series>> {
Ok(Some(
series
.list()?
.apply_to_inner(&|series: Series| -> PolarsResult<Series> {
let series = series.binary()?;
let mut out: Vec<u32> = Vec::with_capacity(series.len());
out.extend(as_fixed_binary(series).flatten().map(ph_to_idx));
Ok(Series::from_vec("reference_idxs", out))
})?
.into_series(),
))
},
SpecialEq::from_type(DataType::List(DataType::UInt32.into())),
)
.alias("reference_idxs"),
)
.select([col("reference_idxs")])
.with_streaming(true)
.sink_parquet(
"narinfo-references.parquet".into(),
ParquetWriteOptions::default(),
)?;
eprintln!("{DONE}");
Ok(())

View file

@ -1,7 +1,13 @@
use anyhow::Result;
use owning_ref::ArcRef;
use owning_ref::{ArcRef, OwningRef};
use rayon::prelude::*;
use std::{fs::File, ops::Range, slice};
use std::{
fs::File,
mem,
ops::{Deref, Range},
slice,
sync::Arc,
};
use polars::{
datatypes::BinaryChunked,
@ -24,6 +30,16 @@ pub fn hash64(h: &[u8; 20]) -> u64 {
u64::from_ne_bytes(buf)
}
pub fn leak<O, T: ?Sized>(r: OwningRef<Arc<O>, T>) -> &T {
// SAFETY: Either `ptr` points into the `Arc`, which lives until `r` is dropped,
// or it points at something else entirely which lives at least as long.
unsafe {
let ptr: *const T = r.deref();
mem::forget(r);
&*ptr
}
}
/// Read a dense `store_path_hash` array from `narinfo.parquet`,
/// returning it as an owned [FixedBytes].
pub fn load_ph_array() -> Result<FixedBytes<20>> {